Protein Alignment bcd and Hoxc4

DIOPT Version :9

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001103354.1
• Gene: Hoxc4 / 24459
• RGDID: 1586210
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 252
• Identity: 63/252 - (25%)
• Similarity: 90/252 - (35%)
• Gaps: 85/252 - (33%)

  Fly     7 DQNFYHHPLPHTHTHPHPHSHP-HP-----------------HSHPHPHHQHPQLQLPPQFRNPF 53
            :..|.||   |...:|.|...| :|                 |......|.||:...|  ...|.
  Rat    42 ESGFQHH---HQELYPPPPPRPSYPERQYSCTSLQGPGNSRAHGPAQAGHHHPEKSQP--LCEPA 101

  Fly    54 DLLFDERTGAINYNYIRPYLPNQMPKPDVFPSEELPDSLVMRR---------------------- 96
            .|     :||       ...|:..|.....|:.:.|.|...::
  Rat   102 PL-----SGA-------SASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGG 154

  Fly    97 -PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 160
             |:|:||.:|..|:.|||:.|...||||..|..:::..|.|...|:||||:|||.:.|      |
  Rat   155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWK------K 213

  Fly   161 DQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPSTPTAHMTEHYSES 217
            |...      |..|.....|         .||.|:.|: :.||.|     :|.:|:|
  Rat   214 DHRL------PNTKVRSAPP---------AGAAPSTLS-AATPGT-----SEDHSQS 249

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeobox	106..153	CDD:278475	20/46 (43%)
Hoxc4	NP_001103354.1	Homeobox	159..213	CDD:395001	24/59 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.900