DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and Hoxc9

DIOPT Version :10

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_032298.1 Gene:Hoxc9 / 15427 MGIID:96199 Length:260 Species:Mus musculus


Alignment Length:118 Identity:36/118 - (30%)
Similarity:54/118 - (45%) Gaps:20/118 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 NYNY-----IRPYLPNQMPKP---------------DVFPSEELPDSLVMRRPRRTRTTFTSSQI 109
            :|.|     :|...|..:|.|               |:.||..:.:.:..|..|:.|..:|..|.
Mouse   140 DYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQT 204

  Fly   110 AELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQ 162
            .|||:.||...|||..|..:::..|.|...||||||:|||.:.|..:.:..|:
Mouse   205 LELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDK 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeodomain 106..153 CDD:459649 21/46 (46%)
Hoxc9NP_032298.1 Hox9_act 1..179 CDD:461369 7/38 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 120..182 9/41 (22%)
Homeodomain 193..241 CDD:459649 20/47 (43%)

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