Protein Alignment bcd and Hoxb1

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: XP_006532343.1
• Gene: Hoxb1 / 15407
• MGIID: 96182
• Length: 330
• Species: Mus musculus
• Alignment Length: 246
• Identity: 62/246 - (25%)
• Similarity: 91/246 - (36%)
• Gaps: 70/246 - (28%)

  Fly    11 YHHP---------LPHTHTHPHPHSHPHPHSHP----------------------HPHHQHPQLQ 44
            |.||         ||.::......|.|:|...|                      .|....|...
Mouse   107 YFHPSSYGAQLGGLPDSYGAGGVGSGPYPPPQPPYGTEQTATFASAYDLLSEDKESPCSSEPSTL 171

  Fly    45 LPPQF------RNPFDLLFDERTGAINYNYI----RPYLPNQMPKPDVFPSEEL------PDSLV 93
            .|..|      |||      .:||....::.    |.|  .:.|:|.:....:|      ...|.
Mouse   172 TPRTFDWMKVKRNP------PKTGRAQRSHFLSLARAY--TEGPEPGLHSFLQLLLLAAKVSELG 228

  Fly    94 MRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 158
            :..|...||.||:.|:.|||:.|...:||:..|..:::|.|.|...||||||:|||.:
Mouse   229 LGAPGGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK------- 286

  Fly   159 HKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALT-PSPTPSTPTA 208
            .|.:..||..:..|       ||.....:.|..:..:|.| |..:||:.|:
Mouse   287 QKKREREGGRMPAG-------PPGCPKEAAGDASDQSACTSPEASPSSITS 330

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)
Hoxb1	XP_006532343.1	Homeodomain	236..289	CDD:459649	24/59 (41%)