DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and Gsx1

DIOPT Version :10

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_032204.1 Gene:Gsx1 / 14842 MGIID:95842 Length:261 Species:Mus musculus


Alignment Length:138 Identity:45/138 - (32%)
Similarity:63/138 - (45%) Gaps:22/138 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 MPKPDVF-------PSEELPDSLVMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL 134
            :|.|..|       .|.:||.|      :|.||.|||:|:.|||:.|....||:..|..:::..|
Mouse   125 LPDPRQFHCISVDSSSNQLPSS------KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYL 183

  Fly   135 ALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGG---GATPNA 196
            .|...||||||:|||.:||   .:.|..::.|   ..|.....|.|...:..||..   ....:.
Mouse   184 NLSEKQVKIWFQNRRVKHK---KEGKGSNHRG---GAGAGAGGGAPQGCKCSSLSSAKCSEDDDE 242

  Fly   197 LTPSPTPS 204
            |..||:.|
Mouse   243 LPMSPSSS 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeodomain 106..153 CDD:459649 20/46 (43%)
Gsx1NP_032204.1 SNAG domain. /evidence=ECO:0000250 1..20
Homeodomain 147..203 CDD:459649 27/58 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..261 13/56 (23%)
Blue background indicates that the domain is not in the aligned region.

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