Protein Alignment bcd and Hoxd11

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001414331.1
• Gene: Hoxd11 / 102553842
• RGDID: 7730597
• Length: 336
• Species: Rattus norvegicus
• Alignment Length: 178
• Identity: 49/178 - (27%)
• Similarity: 70/178 - (39%)
• Gaps: 34/178 - (19%)

  Fly     7 DQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDERTGA--INYNYI 69
            ||.:...|.|       |.:.|.|...|          .|||.....| ..|.:.||  ...:..
  Rat   177 DQFYEAAPGP-------PFAGPQPQPAP----------APPQPEGAAD-KGDPKAGAGGGGGSPC 223

  Fly    70 RPYLPNQMPK-------------PDVFPSEELPDSLVMRRPRRTRTTFTSSQIAELEQHFLQGRY 121
            ....|...||             |....:|:...::..:|.|:.|..:|..||.|||:.|....|
  Rat   224 SKATPGPEPKGAAEGGGGEGEGPPGEAGAEKSGGTVAPQRSRKKRCPYTKYQIRELEREFFFNVY 288

  Fly   122 LTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPL 169
            :...:...||..|.|...||||||:|||.:.| :.::.:.|.:.|.||
  Rat   289 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEK-KLNRDRLQYFTGNPL 335

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)
Hoxd11	NP_001414331.1	None