Protein Alignment bcd and hoxc4

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: XP_002936684.1
• Gene: hoxc4 / 100486039
• XenbaseID: XB-GENE-967141
• Length: 297
• Species: Xenopus tropicalis
• Alignment Length: 197
• Identity: 49/197 - (24%)
• Similarity: 70/197 - (35%)
• Gaps: 72/197 - (36%)

  Fly     7 DQNFYHHP--LPHTHTHP-------------HPHSHPHPHSHPHPHH---------QHPQLQLPP 47
            |..|.||.  .|....:|             :|.:||..|..|..:|         :||...|
 Frog    75 DPAFQHHQDLYPPRTAYPERQFSCASIQAPGNPATHPRLHGQPQSNHNLVGKSQLCEHPTPSL-- 137

  Fly    48 QFRNPFDLLFDERTGAINYNYIRPYLPNQMPKPDV---FPSEELPDSLVMRR------------- 96
                           |.|.:...|     .|.|..   .|:.|.|.:...::
 Frog   138 ---------------ASNSSSSSP-----SPAPTACTQAPTSEHPTNTASKQPIVYPWMKKIHVS 182

  Fly    97 ----------PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 151
                      |:|:||.:|..|:.|||:.|...||||..|..:::..|.|...|:||||:|||.:
 Frog   183 SVNPNYTGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 247

  Fly   152 HK 153
            .|
 Frog   248 WK 249

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)
hoxc4	XP_002936684.1	Homeodomain	194..250	CDD:459649	25/56 (45%)