Protein Alignment bcd and hoxa3

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001120901.1
• Gene: hoxa3 / 100151729
• XenbaseID: XB-GENE-482267
• Length: 406
• Species: Xenopus tropicalis
• Alignment Length: 411
• Identity: 98/411 - (23%)
• Similarity: 136/411 - (33%)
• Gaps: 165/411 - (40%)

  Fly     3 QPPPDQNF----YHHP----------LPHTHTHPHPHS-----HPHPHSHPHPHHQHPQLQLPPQ 48
            |.||..:.    ||.|          :||...:....|     :...:..|....|.|..|.||.
 Frog    32 QYPPSSSLLETEYHRPACSLQSPGSAVPHHKANDINESCMRTINSQSNQAPVIPEQQPTPQGPPP 96

  Fly    49 FRNPFDLLFDERTGAIN--YNYIRPYLPNQMPKPDVFP---------------SEELPDSLV--- 93
            ..:|.....:..|.:.|  .:...|.:..|     :||               |....:|..
 Frog    97 SVSPPQTTSNAATASSNKATSITSPTMSKQ-----IFPWMKESRQNTKQQKAGSSSSGESCAGDK 156

  Fly    94 ----MRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 154
                ....:|.||.:||:|:.|||:.|...|||..||..:::..|.|...|:||||:|||.::|
 Frog   157 SPPGQSSSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK- 220

  Fly   155 QSDQHKDQSYEGMPLSPGMKQSDGDPP---SLQTLSLGG---------------GATPNALT--- 198
                 |||..:.|     |..|.|..|   .:.|.|:||               ..:|.|..
 Frog   221 -----KDQKGKSM-----MTSSGGQSPCRSPVPTPSVGGYLNSMHSLVNSVPYEPQSPPAFNKHH 275

  Fly   199 ----------PSPTPSTP--------TAHMTEHY-----SESFNAYYN--------YNGGH---- 228
                      |||..|.|        ||.:|..|     .:|..||.|        |.||:
 Frog   276 PSAYGVPAPYPSPHNSCPPHQKRYSGTAAVTPEYEPHPLQQSSGAYGNPHVQGSPVYVGGNYVET 340

  Fly   229 --------------NHAQANRHMHMQYPSGGGPGPGSTNVNGGQFFQQQQVHNHQQQLHHQG--- 276
                          :|:.:|    |.| ||.||      :|.|               ||.|
 Frog   341 MTNSGPSMFGLSHLSHSSSN----MDY-SGAGP------MNSG---------------HHHGPCD 379

  Fly   277 NH-------VPHQMQQQQQQA 290
            :|       ..|..|.:.|:|
 Frog   380 SHPTYTDLSAHHNPQGRIQEA 400

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	21/46 (46%)
hoxa3	NP_001120901.1	Homeodomain	165..221	CDD:459649	26/61 (43%)
		DUF4074	343..404	CDD:463833	18/84 (21%)