DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen and hoxa13a

DIOPT Version :10

Sequence 1:NP_476793.1 Gene:zen / 40828 FlyBaseID:FBgn0004053 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_001078963.1 Gene:hoxa13a / 570239 ZFINID:ZDB-GENE-990415-5 Length:310 Species:Danio rerio


Alignment Length:148 Identity:46/148 - (31%)
Similarity:71/148 - (47%) Gaps:29/148 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PVHQAKVGSYSADPSEVKYSDLIYGHHHDVNPIGLP-PNYNQMNSNPTTLND--HCSPQHVHQQH 70
            ||.||..|     |||.::..|            || .:|.......:..|.  :|:.:   ||.
Zfish   174 PVVQAISG-----PSEPRHESL------------LPMESYQPWAITTSGWNGQVYCTKE---QQQ 218

  Fly    71 VSS--DENLPSQPNH----DSQRVKLKRSRTAFTSVQLVELENEFKSNMYLYRTRRIEIAQRLSL 129
            ..:  ..::|...:|    .|...:.::.|..:|.|||.|||.|:.:|.::.:.:|..|:.:.:|
Zfish   219 TGNVWKSSIPESVSHGGADGSSFRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAQTNL 283

  Fly   130 CERQVKIWFQNRRMKFKK 147
            .||||.|||||||:|.||
Zfish   284 SERQVTIWFQNRRVKEKK 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zenNP_476793.1 Homeodomain 91..147 CDD:459649 25/55 (45%)
hoxa13aNP_001078963.1 HoxA13_N 29..148 CDD:463521
Homeodomain 245..301 CDD:459649 25/55 (45%)
Blue background indicates that the domain is not in the aligned region.

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