DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen and hoxb13a

DIOPT Version :10

Sequence 1:NP_476793.1 Gene:zen / 40828 FlyBaseID:FBgn0004053 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_001038377.1 Gene:hoxb13a / 559921 ZFINID:ZDB-GENE-050812-1 Length:303 Species:Danio rerio


Alignment Length:153 Identity:45/153 - (29%)
Similarity:72/153 - (47%) Gaps:19/153 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 HYYPVHQAKVGSYSADPSEVKYSDLIYGHHHDVNPIGLPPNYNQMNS-NPTTLND------HCSP 63
            |.||.....:.|| .|.|.|:........|..:.|         |:| .|..|.:      :||.
Zfish   153 HSYPSPYQSMASY-LDVSVVQTLGTGEPRHDSLLP---------MDSYQPWALANGWGSQMYCSK 207

  Fly    64 QHVHQQHV--SSDENLPSQPNHDSQRVKLKRSRTAFTSVQLVELENEFKSNMYLYRTRRIEIAQR 126
            ......|:  |:..::.:..:......:.::.|..:|.|||.|||.|:.:|.::.:.:|.:|:..
Zfish   208 DQGQAGHLWKSALADVVAHQHDGGSFRRGRKKRIPYTKVQLKELEKEYAANKFITKDKRRKISAV 272

  Fly   127 LSLCERQVKIWFQNRRMKFKKDI 149
            .:|.|||:.|||||||:|.||.|
Zfish   273 TNLSERQITIWFQNRRVKEKKFI 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zenNP_476793.1 Homeodomain 91..147 CDD:459649 24/55 (44%)
hoxb13aNP_001038377.1 HoxA13_N 27..145 CDD:463521
Homeodomain 237..293 CDD:459649 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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