DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen and Lmx1a

DIOPT Version :10

Sequence 1:NP_476793.1 Gene:zen / 40828 FlyBaseID:FBgn0004053 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:241 Identity:63/241 - (26%)
Similarity:92/241 - (38%) Gaps:51/241 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 HCSPQHVHQQHVSSDENLPSQPNHDSQRVKLKRSRTAFTSVQLVELENEFKSNMYLYRTRRIEIA 124
            ||.       .|..||....:| .|.:|.. ||.||..||.|..:.:..|..:....|..|..:|
  Fly   403 HCG-------FVGLDEEDLLRP-RDGRRGP-KRPRTILTSQQRKQFKASFDQSPKPCRKVREALA 458

  Fly   125 QRLSLCERQVKIWFQNRRMKFKKDIQGHREPKSNAKLAQPQAEQSAHRGIVKRLMSYSQDPREGT 189
            :...|..|.|::||||:|.|.|| ||  |:.|.|....   ....:.||......:..:|..:..
  Fly   459 KDTGLSVRVVQVWFQNQRAKMKK-IQ--RKAKQNGGSG---GGSGSGRGTGNSSATDDKDTNDKE 517

  Fly   190 AAAEKRPM--------------MAVAPVNPK-----PDYQASQKMKTEASTNNGMCSSADLS--- 232
            ....|:.:              .|..|:||.     .||        .|::|:..||| |||   
  Fly   518 DKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPDDY--------PANSNDSFCSS-DLSLDG 573

  Fly   233 ---EILEHLAQTTAAPQVSTATSSTGTSTNSASSSSSGHYSYNVDL 275
               :.|:..|.:.:...:.  ..||.:|.|..|.|.|..:....:|
  Fly   574 SNFDQLDDDADSLSLNNLE--LQSTSSSGNQHSHSHSNPHDMLANL 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zenNP_476793.1 Homeodomain 91..147 CDD:459649 20/55 (36%)
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649 20/55 (36%)
Blue background indicates that the domain is not in the aligned region.

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