Protein Alignment zen and Cdx1

DIOPT Version :10

• Sequence 1: NP_476793.1
• Gene: zen / 40828
• FlyBaseID: FBgn0004053
• Length: 353
• Species: Drosophila melanogaster
• Sequence 2: NP_001406562.1
• Gene: Cdx1 / 364883
• RGDID: 621233
• Length: 273
• Species: Rattus norvegicus
• Alignment Length: 195
• Identity: 58/195 - (29%)
• Similarity: 83/195 - (42%)
• Gaps: 37/195 - (18%)

  Fly    30 LIYGHHHDVNPIGLPPNYNQMNSNP----TTLNDHCSPQHVHQQHVSSDE----NLPSQPNHDSQ 86
            |.:|...|.:|:..||     ...|    .:|....:|.....|..:..|    |:.:.....|.
  Rat    90 LAFGPPPDFSPVPAPP-----GPGPGILAQSLGGPGAPSSPGVQRRTPYEWMRRNVAAAGGGGSG 149

  Fly    87 RVKLK-RSRTAFTSVQLVELENEFKSNMYLYRTRRIEIAQRLSLCERQVKIWFQNRRMKFKKDIQ 150
            :.:.| :.|..:|..|.:|||.||..:.|:...|:.|:|..|.|.||||||||||||.|
  Rat   150 KTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAK------ 208

  Fly   151 GHREPKSNAKLAQPQAEQSAHRGIVKRLMSYSQ--DPREGTAAAEKRPMMAVAPVN------PKP 207
               |.|.|.|..|.|.:|.      ::.|..:|  .|.:||......|:.::.|.|      |.|
  Rat   209 ---ERKVNKKKQQQQQQQQ------QQPMPPTQLPLPLDGTPTPSGPPLGSLCPTNAGLLGTPSP 264

  Fly   208  207
              Rat   265  264

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
zen	NP_476793.1	Homeodomain	91..147	CDD:459649	28/56 (50%)
Cdx1	NP_001406562.1	Caudal_act	13..140	CDD:461413	11/54 (20%)
		Homeodomain	156..211	CDD:459649	28/63 (44%)