DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen and hoxd3a

DIOPT Version :9

Sequence 1:NP_476793.1 Gene:zen / 40828 FlyBaseID:FBgn0004053 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:431 Identity:101/431 - (23%)
Similarity:144/431 - (33%) Gaps:171/431 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 YYPVHQAKVGS-----YSADPSEVKYSDLIYGHHH--DVNPIGLPPNYNQMNSNPTTLNDHCSPQ 64
            |.|.||....|     |.:....::.:.:....|.  |:|...:.|:.:|.||.|.::::     
Zfish    26 YGPTHQGFSSSSIENDYQSPICPIQTTSVRQATHKNGDINGSCMRPSASQGNSQPESISE----- 85

  Fly    65 HVHQQHVSSDENLPSQPNHDSQRVK---------------------------------------- 89
              .||......:.||...:.:|:.|                                        
Zfish    86 --QQQAAPLAASSPSPSTNSTQKKKSPSSNGSSTATPVISKQIFPWMKETRQNAKQKSTNCPAAG 148

  Fly    90 ------------LKRSRTAFTSVQLVELENEFKSNMYLYRTRRIEIAQRLSLCERQVKIWFQNRR 142
                        .||.|||:||.||||||.||..|.||.|.||:|:|..|:|.|||:||||||||
Zfish   149 ETCDDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRR 213

  Fly   143 MKFKKDIQ---------GHREPKSNAKLAQPQAEQSAHRGIVKRL-----MSYS-------QDPR 186
            ||:|||.:         ||...:|      |....|.|.|...:|     :||.       ..|:
Zfish   214 MKYKKDQKSKGIMHSPLGHSPDRS------PPLSGSNHIGYSGQLPNVNSLSYDAPSPPSFAKPQ 272

  Fly   187 EGT--AAAEKRPMMAVAPVN---PKPDYQASQKMKTEASTNNGMCSSADLSEILEHLAQTTAAPQ 246
            :..  .||...|:....|..   |..:|.      ..:...||..::|:|.              
Zfish   273 QNIYGLAAYTAPLGGCIPQQKRYPGTEYD------HHSMQGNGSFANANLQ-------------- 317

  Fly   247 VSTATSSTGTSTNSASSS----SSGHYSYNVDLVLQSIKQDLEAAAQAWSKSKSAPILATQSWHP 307
             |:.....|...:|..:|    :.||..                                   ||
Zfish   318 -SSPVYVGGNFVDSMPASGPMFNLGHLP-----------------------------------HP 346

  Fly   308 SSQS-------QVPTSVHAAPSMNLSWGEPAAKSRKLSVNH 341
            ||.|       |:|.:.|..|.      :|......||.:|
Zfish   347 SSASVDYSCAAQIPGNHHHGPC------DPHPTYTDLSSHH 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zenNP_476793.1 Homeobox 93..146 CDD:278475 36/52 (69%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 20/143 (14%)
Abdominal-A 116..237 CDD:332641 43/120 (36%)
Antp-type hexapeptide 126..131 0/4 (0%)
Homeobox 165..217 CDD:306543 36/51 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 6/32 (19%)
DUF4074 333..394 CDD:315871 16/90 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
43.770

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