DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen and hoxb1a

DIOPT Version :9

Sequence 1:NP_476793.1 Gene:zen / 40828 FlyBaseID:FBgn0004053 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_571190.2 Gene:hoxb1a / 30337 ZFINID:ZDB-GENE-990415-101 Length:316 Species:Danio rerio


Alignment Length:243 Identity:71/243 - (29%)
Similarity:90/243 - (37%) Gaps:78/243 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YPVHQAKVGSYSADPSEVKYSDLIYGHHHDVNPIGLPPNYNQM--------NSNPTTLNDH--CS 62
            |..||     |..:|.:    |.:|.|....:.....|:|..|        .:.|.....|  |.
Zfish   109 YAQHQ-----YFINPEQ----DGMYYHSSGFSTSNASPHYGSMAGAYCGAQGAVPAAPYQHHGCE 164

  Fly    63 PQHVHQ--------------QHVSSDENLPSQPNHDSQRVKLKRS------------------RT 95
            .|. ||              |....|.:.| .|......:|:||:                  ||
Zfish   165 GQD-HQRAYSQGTYADLSASQGTEKDTDQP-PPGKTFDWMKVKRNPPKTGKVAEYGLGPQNTIRT 227

  Fly    96 AFTSVQLVELENEFKSNMYLYRTRRIEIAQRLSLCERQVKIWFQNRRMKFKKDIQGHREPKSNAK 160
            .||:.||.|||.||..:.||.|.||:|||..|.|.|.||||||||||||.||..:....|.|:..
Zfish   228 NFTTKQLTELEKEFHFSKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREKEGLAPASSTS 292

  Fly   161 LAQPQAEQSAHRGIVKRLMSYSQDPREGTAAAEKRPMMAVAPVNPKPD 208
             ::...:||.|        |.|..|.                .:|.||
Zfish   293 -SKDLEDQSDH--------STSTSPE----------------ASPSPD 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zenNP_476793.1 Homeobox 93..146 CDD:278475 34/70 (49%)
hoxb1aNP_571190.2 Homeobox 226..278 CDD:278475 34/51 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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