DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen2 and nkx2.4a

DIOPT Version :10

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_001104636.1 Gene:nkx2.4a / 562300 ZFINID:ZDB-GENE-030131-6336 Length:345 Species:Danio rerio


Alignment Length:202 Identity:56/202 - (27%)
Similarity:81/202 - (40%) Gaps:42/202 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 YSVSDLMMYPCVELNVEAAPTA-----TTRS-----SEKSKRSRTAFSSLQLIELEREFHLNKYL 68
            ||.....|.|...:|:....|.     ||:|     :...::.|..||..|:.||||.|...|||
Zfish   121 YSTISRFMGPSTGMNMTGMGTLTGMADTTKSIPPLHAAPRRKRRVLFSQAQVCELERRFKQQKYL 185

  Fly    69 ARTRRIEISQRLALTERQVKIWFQNRRMKLKKSTNRKGA-----IGAL--------TTSIPLSSQ 120
            :...|..::..:.||..||||||||.|.|:|:....|.|     .|.|        ..::|:   
Zfish   186 SAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGNLCQQQQSPRRVAVPV--- 247

  Fly   121 SSEDLQKDDQIVERLLRYANTNVETAPLRQVDHGVL-----------EEGQITPPYQSYDYLHEF 174
                |.||.:..:........|.:....:|...||:           :..|:....|:.| |.|.
Zfish   248 ----LVKDGKPCQNGSNTPTPNQQQMQQQQNGGGVVLPTSSNSMNQHQSQQVNALVQAQD-LEEM 307

  Fly   175 SPEPMAL 181
            ||.|.:|
Zfish   308 SPSPPSL 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 25/55 (45%)
nkx2.4aNP_001104636.1 Homeodomain 161..217 CDD:459649 25/55 (45%)

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