DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment zen2 and gsb-n

DIOPT Version :10

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster


Alignment Length:169 Identity:49/169 - (28%)
Similarity:71/169 - (42%) Gaps:53/169 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VSDLMMYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRL 80
            :||....|.:.|            ..|.:||||.|::.||..|||.|...:|.....|.|::|..
  Fly   167 ISDTESEPGIPL------------KRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTT 219

  Fly    81 ALTERQVKIWFQNRRMKLKKSTNRKGAIGALTTSIPLSSQSSEDLQKDDQIVERLLRYANTNV-- 143
            ||||.::::||.|||.:|:|.:.  |:...|:   |::|.||                 |..|  
  Fly   220 ALTEARIQVWFSNRRARLRKHSG--GSNSGLS---PMNSGSS-----------------NVGVGV 262

  Fly   144 ----ETAPLRQVDHGVLEEGQITPPYQSYDYLHEFSPEP 178
                .||||   .:|.|..|.:.          .:||.|
  Fly   263 GLSGATAPL---GYGPLGVGSMA----------GYSPAP 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 25/55 (45%)
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 25/55 (45%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.