DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen2 and nkx2.2a

DIOPT Version :10

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_571497.2 Gene:nkx2.2a / 30697 ZFINID:ZDB-GENE-980526-403 Length:273 Species:Danio rerio


Alignment Length:216 Identity:54/216 - (25%)
Similarity:82/216 - (37%) Gaps:68/216 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ENYFVDN--------YSVSDLMMYPCVELNVEAAPTAT----------------TRS----SEKS 43
            :|.|.||        .:.:|.:.|....|:..:..|:.                |.|    |.|.
Zfish    65 KNPFYDNSDNPYTRWLATTDSIQYSLHGLSANSQDTSAKSPEPSADESPDNDKETSSNGSDSGKK 129

  Fly    44 KRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTERQVKIWFQNRRMKLKKSTNRKG-- 106
            ::.|..||..|..||||.|...:||:...|..::..:.||..||||||||.|.|:|::...||  
Zfish   130 RKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGME 194

  Fly   107 ----------AIGALT-------------------TSIPLSSQSSEDLQKDDQIVERLLRY-ANT 141
                      |:..|.                   ..||.|:.|::.||.        ::| |:.
Zfish   195 VTHLPSPRRVAVPVLVRDGKPCHTLKAQDLAATFQAGIPFSAYSAQSLQH--------MQYNAHY 251

  Fly   142 NVETAPLRQVDHGVLEEGQIT 162
            :..|.|.....|.:::..|.|
Zfish   252 SAATTPQFPTAHHLVQTQQWT 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 24/55 (44%)
nkx2.2aNP_571497.2 COG5576 93..218 CDD:227863 35/124 (28%)
Homeodomain 130..186 CDD:459649 24/55 (44%)

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