DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen2 and Gbx1

DIOPT Version :9

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_001258382.1 Gene:Gbx1 / 246149 RGDID:621864 Length:425 Species:Rattus norvegicus


Alignment Length:129 Identity:53/129 - (41%)
Similarity:74/129 - (57%) Gaps:18/129 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EAAPTAT--TRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTERQVKIWFQ 92
            |..|.||  |....||:|.||||:|.||:|||:|||..|||:.|.|.:|:..|.|:|.|||||||
  Rat   308 EGTPVATGVTTPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQ 372

  Fly    93 NRRMKLK--KSTNRKGAIGALTTSIPLSSQSSEDLQKDDQIVERLLRYANTNVETAPLRQVDHG 154
            |||.|.|  |:.|             :||:|.|.: ::.:||..:..:.|.....:..:|::.|
  Rat   373 NRRAKWKRIKAGN-------------VSSRSGEPV-RNPKIVVPIPVHVNRFAVRSQHQQMEQG 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeobox 46..99 CDD:278475 33/52 (63%)
Gbx1NP_001258382.1 Homeobox 326..379 CDD:278475 33/52 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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