DRSC/TRiP Functional Genomics Resources

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Protein Alignment zen2 and Hoxa3

DIOPT Version :10

Sequence 1:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_001300749.1 Gene:Hoxa3 / 103690130 RGDID:1561431 Length:444 Species:Rattus norvegicus


Alignment Length:208 Identity:67/208 - (32%)
Similarity:86/208 - (41%) Gaps:65/208 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 SKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTERQVKIWFQNRRMKLKKSTNRKGA 107
            |||:|||::|.||:|||:|||.|:||.|.||:|::..|.|||||:||||||||||.||....||.
  Rat   192 SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGM 256

  Fly   108 I---------------GA---------LTTSIPLSSQSSEDLQKDDQIVERLLRYANTNVETAPL 148
            :               ||         |..|:|...||.....|                     
  Rat   257 LTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSK--------------------- 300

  Fly   149 RQVDHGVLEEGQITPPYQSYDYLHEFSPEPM---ALPQLPFNEFDANWASSWLGLEPTI-PIAEN 209
                          ||..:|.......|.|:   |.|..|...:.|  |.|..|..|.. |.|..
  Rat   301 --------------PPQGAYGLPPASYPAPLPSCAPPPPPQKRYTA--AGSGAGGTPEYDPHAHG 349

  Fly   210 VIEHNTQDQPMIQ 222
            :..:.:...|.:|
  Rat   350 LQGNGSYGTPHLQ 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zen2NP_476794.1 Homeodomain 44..100 CDD:459649 37/55 (67%)
Hoxa3NP_001300749.1 COG5576 <182..309 CDD:227863 53/151 (35%)
Homeodomain 193..249 CDD:459649 37/55 (67%)
DUF4074 378..442 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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