Protein Alignment pb and nanog

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001091862.1
• Gene: nanog / 792333
• ZFINID: ZDB-GENE-030131-5486
• Length: 384
• Species: Danio rerio
• Alignment Length: 292
• Identity: 67/292 - (22%)
• Similarity: 102/292 - (34%)
• Gaps: 88/292 - (30%)

  Fly    50 GGVGVSVGQ-PGIGQQGVPPVPSVLMVNKMTP-----NCDKRSADTA---------YWMTAS--E 97
            ||...:..| ||..|.|    ...|..||..|     :.::.|:||.         .|.:||  |
Zfish    69 GGASSTYSQYPGHSQNG----RLFLSYNKTEPDQKAKDAEQTSSDTPSDSEAHTPDSWSSASSRE 129

  Fly    98 GGFIN--SQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMD 160
            |..:.  :.||..:........||..|....:...|...||:|:                  |:|
Zfish   130 GVPLTNLNLPSWRDRDYETDSGSPDSGERNLTSTAGEEPVNLNL------------------GVD 176

  Fly   161 SVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCR 225
            :.|..|.:....                   |....|||:.|.|::..|:..|...|:..:||..
Zfish   177 TQPPLPALTASP-------------------VRPPTLPRKTRAAFSEEQMNALVNRFNVQRYLTP 222

  Fly   226 PRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGC 290
            .....:|.:..||.:|||.||||||||.||.                   |.||:..:::.....
Zfish   223 AEMKTLAGATGLTYKQVKTWFQNRRMKLKRH-------------------QRDSSWMTERYVVNA 268

  Fly   291 ELPSDDIPDSTSNSRGHNNNTPSATNN---NP 319
                  :|::.::.....:..|.|..:   ||
Zfish   269 ------VPNTPASQSQFQSEPPGANQDHYINP 294

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	22/55 (40%)
nanog	NP_001091862.1	Homeodomain	196..252	CDD:459649	22/55 (40%)