DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and lbx1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001072559.1 Gene:lbx1 / 780014 XenbaseID:XB-GENE-6455157 Length:265 Species:Xenopus tropicalis


Alignment Length:225 Identity:63/225 - (28%)
Similarity:86/225 - (38%) Gaps:65/225 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 GYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQL 210
            |..|.|: |..:|.|.:..:...:..|..|||                        |||:||.|:
 Frog    98 GLEVSVL-QAAEGRDGMTIFGQRQTPKKRRKS------------------------RTAFTNHQI 137

  Fly   211 LELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDD 275
            .||||.|.:.|||....|.:||..|.||..||..||||||.|.||      |.|:.|..::....
 Frog   138 YELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKR------DLEEMKADVESVKK 196

  Fly   276 QSDSNSNSKKSCQGCELPSDDIPD---STSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGISSN 337
            .|.|...:..:....|..::.:.|   |.|...|.:.:.|           |:|:|.|       
 Frog   197 MSPSTVEAVLTISELEEETNSVRDDSRSRSPQLGLSGHMP-----------LSPSSPL------- 243

  Fly   338 LMGSTTVSASNVISADSSVASSVSLDEDIE 367
                |....|...|.|         :||:|
 Frog   244 ----TEQHTSKECSED---------EEDVE 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 29/55 (53%)
lbx1NP_001072559.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33
Homeodomain 126..182 CDD:459649 32/79 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..265 17/80 (21%)
Blue background indicates that the domain is not in the aligned region.

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