DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Isx

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001281207.1 Gene:Isx / 71597 MGIID:1918847 Length:242 Species:Mus musculus


Alignment Length:124 Identity:38/124 - (30%)
Similarity:65/124 - (52%) Gaps:14/124 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 VGVGYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLP-------RR 200
            :|:.:.:..:.:.|....|:|. |....|:.||:::...::.:.      |....|       ||
Mouse    23 LGLSFSIEAILKKPTERRSLPR-PQSICKEDSRQTTIPGSKLER------PPQDQPQEEKKNKRR 80

  Fly   201 LRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLS 259
            :||.:|..||.||||.|||..|.....|.::|:.::|.|.:|::||||:|.|.::|..|
Mouse    81 VRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQEKS 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 26/55 (47%)
IsxNP_001281207.1 Homeodomain 79..135 CDD:459649 26/55 (47%)

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