Protein Alignment pb and Hoxa6

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001178016.1
• Gene: Hoxa6 / 685732
• RGDID: 1590236
• Length: 233
• Species: Rattus norvegicus
• Alignment Length: 266
• Identity: 83/266 - (31%)
• Similarity: 109/266 - (40%)
• Gaps: 82/266 - (30%)

  Fly    23 LNPLQVQTGQTSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMT----PNCD 83
            |.|.....|.:|||                ..:...|...||.    .|||..|:.:    .:|.
  Rat    35 LRPFPASYGASSLP----------------DKTYTSPCFYQQS----NSVLACNRASYEYGASCF 79

  Fly    84 KRSADTAYWMTASEGGFINS-QPSMAEFLNHLSPE---SPKIGTPVGSGAIGGVGVNVNVNVGVG 144
            ....|.:   .||..|  || |....::| |.|||   .|      .|.::.|..::
  Rat    80 YSDKDLS---GASPSG--NSKQRGPGDYL-HFSPEQQYKP------DSSSVQGKALH-------- 124

  Fly   145 VGYPVGVVPQTPDGMD---SVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYT 206
                       .:|.|   :.|.|||| ::..|...:...:.|              ||.|..||
  Rat   125 -----------EEGTDRKYTSPVYPWM-QRMNSCAGAVYGSHG--------------RRGRQTYT 163

  Fly   207 NTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLK 271
            ..|.||||||||||:||.|.||||||.:|.|||||:|:||||||||.|     |.:...|.....
  Rat   164 RYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWK-----KENKLINSTQAS 223

  Fly   272 GDDDQS 277
            |:|.::
  Rat   224 GEDSEA 229

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	40/55 (73%)
Hoxa6	NP_001178016.1	Homeodomain	156..212	CDD:459649	41/60 (68%)