DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Barx2

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001414382.1 Gene:Barx2 / 679701 RGDID:1584840 Length:290 Species:Rattus norvegicus


Alignment Length:278 Identity:74/278 - (26%)
Similarity:114/278 - (41%) Gaps:67/278 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 PSVLMVNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGS-GAIGGV 133
            ||:::..|...:|....:..||.:.:    .|..||::   ::||.|..|.: |||.: .|:...
  Rat    49 PSLVVRPKPLHSCTGSPSLRAYPLLS----VITRQPTV---ISHLVPTGPGL-TPVNTRHAVAAE 105

  Fly   134 GVNVNVNVGVGVGYPVGVVPQTPDG-----MDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVP 193
            .      .............:||.|     .:|..|.|..::||                     
  Rat   106 A------AAAAAAAAAAAAAETPGGEALASSESETEQPTPRQKK--------------------- 143

  Fly   194 ENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTL 258
                |||.||.:|..||:.|||:|...|||..|.|:::|.||.||:.|||.|:||||||.|:..|
  Rat   144 ----PRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVL 204

  Fly   259 -------SKTDDEDNKDSLKGDDD-QSDSNSNSKK-------SCQGCELPSDD-------IPDST 301
                   :|......|:|:...:: :::...||:.       |.||.|.|.|.       :|...
  Rat   205 KGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQSQEQLGSLQGQEEPRDPQEPKACLVPLEV 269

  Fly   302 SNSRGHNNNTPSATNNNP 319
            :.........|.|::..|
  Rat   270 AEPSQQPQELPEASSEPP 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 31/55 (56%)
Barx2NP_001414382.1 None

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