DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and pitx1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001035436.3 Gene:pitx1 / 678598 ZFINID:ZDB-GENE-060421-3623 Length:285 Species:Danio rerio


Alignment Length:203 Identity:61/203 - (30%)
Similarity:94/203 - (46%) Gaps:39/203 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 KEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAA 233
            ||:...::|.:.|  .|:      |:....||.||.:|:.||.|||..|..|:|.....|.|||.
Zfish    37 KERSVEQRSDDGN--ADD------PKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV 93

  Fly   234 SLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNS-KKSCQGCELPSDDI 297
            ..:|||.:|:|||:|||.|.:::       |.|:        |.|...|| .....|...|.||:
Zfish    94 WTNLTEARVRVWFKNRRAKWRKR-------ERNQ--------QMDLCKNSYLPQFSGLMQPYDDV 143

  Fly   298 PDSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGISSNLMGSTTVSASNVISADSSVASSVSL 362
                         .|:.|.||.:...||| :.|.|...:.....:.:::.::.||.||: ||:|:
Zfish   144 -------------YPTYTYNNWTNKGLTP-APLSTKNFTFFNSMSPLTSQSMFSAPSSI-SSMSM 193

  Fly   363 DEDIEESS 370
            ...:..|:
Zfish   194 ASGMGHSA 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 28/55 (51%)
pitx1NP_001035436.3 COG5576 8..>126 CDD:227863 38/111 (34%)
Homeodomain 59..115 CDD:459649 28/55 (51%)
OAR 247..263 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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