DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Nkx1-1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_035450.1 Gene:Nkx1-1 / 672284 MGIID:109346 Length:440 Species:Mus musculus


Alignment Length:343 Identity:93/343 - (27%)
Similarity:119/343 - (34%) Gaps:117/343 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KSESPLNPLQVQTGQ-TSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPN 81
            :.|:|    :||..| |..|.||.||.|..|.        |.||..:....||..          
Mouse   193 EEEAP----EVQDAQGTEEPRGGSGGLGARGS--------GCPGAAEVEASPVDD---------- 235

  Fly    82 CDKRSADTAYWMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVG 146
                        ||:.|...|            ||.:|  |.|..:...|..|            
Mouse   236 ------------TAAPGPRGN------------SPGAP--GPPATATGAGSAG------------ 262

  Fly   147 YPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLL 211
                   .||.|. :|...|  |.|:|...|                ::|.|||.|||:|..||:
Mouse   263 -------STPQGA-AVTTKP--KRKRTGSDS----------------KSGKPRRARTAFTYEQLV 301

  Fly   212 ELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQ 276
            .||.:|...:||....|:.:|.||.|||.|||:||||||.|.|:|.             .|.|..
Mouse   302 ALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN-------------PGADTS 353

  Fly   277 SDSNSN---SKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNP-----SAGNLT-----PNS 328
            :.:...   ...:..|..||....|.|.|...|    .|.|.:...     |.|.|.     |..
Mouse   354 APTGGGGGPGPGAGPGAGLPGGLSPLSPSPPMG----APLALHGPAGYPAHSPGGLVCAAQLPFL 414

  Fly   329 SLETGISSNLMGSTTVSA 346
            |....:|..::||.|..|
Mouse   415 SSPAVLSPFVLGSQTYGA 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 30/55 (55%)
Nkx1-1NP_035450.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..82
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..291 41/183 (22%)
Homeodomain 289..345 CDD:459649 30/55 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 342..387 12/61 (20%)
Blue background indicates that the domain is not in the aligned region.

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