DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and SHOX

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_000442.1 Gene:SHOX / 6473 HGNCID:10853 Length:292 Species:Homo sapiens


Alignment Length:111 Identity:36/111 - (32%)
Similarity:57/111 - (51%) Gaps:15/111 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 KEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAA 233
            |||:...||.:.:  |...:.:        ||.||.:|..||.|||:.|....|.....|.|::.
Human    98 KEKREDVKSEDED--GQTKLKQ--------RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQ 152

  Fly   234 SLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDS 279
            .|.|:|.:|:|||||||.|.::|     :::.:|..:.|..:..|:
Human   153 RLGLSEARVQVWFQNRRAKCRKQ-----ENQMHKGVILGTANHLDA 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 26/55 (47%)
SHOXNP_000442.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..119 4/28 (14%)
Homeodomain 118..174 CDD:459649 26/55 (47%)
SH3-binding. /evidence=ECO:0000255 242..249
OAR 272..288 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 274..287
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.