DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxc13b

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571621.2 Gene:hoxc13b / 58063 ZFINID:ZDB-GENE-000822-5 Length:273 Species:Danio rerio


Alignment Length:135 Identity:46/135 - (34%)
Similarity:71/135 - (52%) Gaps:29/135 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 GY-PVGVVPQTPDGMDSVPE------YP------------WMKEKKTSRKSSNNNNQGDNSITEF 191
            || .|.|||    |:.:.||      :|            |.::...|::.::.|:...:..::.
Zfish   128 GYLDVPVVP----GISAHPESRHEALFPMDSYQHWALSNGWDEQLYCSKEQTHFNHLWKSQFSDV 188

  Fly   192 VPE----NGL--PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRR 250
            ||.    ||.  .|:.|..||..||.|||||:..:|::.:.||..|:|:..|:||||.:||||||
Zfish   189 VPHQAEMNGYRRGRKKRVPYTKIQLKELEKEYAASKFITKDRRRRISATTSLSERQVTIWFQNRR 253

  Fly   251 MKHKR 255
            :|.|:
Zfish   254 VKEKK 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 28/55 (51%)
hoxc13bNP_571621.2 HoxA13_N 1..109 CDD:463521
Homeodomain 202..258 CDD:459649 28/55 (51%)
Blue background indicates that the domain is not in the aligned region.

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