DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and hoxb6b

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571613.1 Gene:hoxb6b / 58053 ZFINID:ZDB-GENE-000823-7 Length:224 Species:Danio rerio


Alignment Length:112 Identity:51/112 - (45%)
Similarity:64/112 - (57%) Gaps:28/112 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 PEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLP----RRLRTAYTNTQLLELEKEFHFNKYL 223
            |.||||:...:.                    ||:|    ||.|..||..|.||||||||||:||
Zfish   128 PVYPWMQRMNSC--------------------NGMPGSTGRRGRQTYTRFQTLELEKEFHFNRYL 172

  Fly   224 CRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQ----TLSKTDDEDN 266
            .|.|||||:.:|.|||||:|:||||||||.|::    ..:|..||::
Zfish   173 TRRRRIEISHALCLTERQIKIWFQNRRMKWKKENKAVNSAKVSDEED 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 47/107 (44%)
Homeobox 202..254 CDD:278475 37/51 (73%)
hoxb6bNP_571613.1 Antp-type hexapeptide 129..134 3/4 (75%)
Homeobox 151..203 CDD:278475 37/51 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.