DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxa3a

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_571609.1 Gene:hoxa3a / 58049 ZFINID:ZDB-GENE-000823-3 Length:411 Species:Danio rerio


Alignment Length:487 Identity:124/487 - (25%)
Similarity:171/487 - (35%) Gaps:184/487 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 CGGAGVVGGV-----GGVGVSVGQ---------------PGIGQQGVPPVPSVLMV-NKMTPNCD 83
            |.|:.:..|:     .|:|....|               |....|. |.:.:.|.. |:|:..|.
Zfish     7 CDGSAIYSGLPYQSANGLGYDASQQQYLQALHAESEYHRPACSLQS-PGISAGLHTSNEMSEVCQ 70

  Fly    84 KRSADTAYWMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYP 148
            :.:...|.....|:    |.||          |.:|       ||......:|...|:......|
Zfish    71 QINGTQATVTDTSD----NKQP----------PTAP-------SGPSSPSSLNQIPNIDSAAKNP 114

  Fly   149 VGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSI---------TEFVPENGLPRRLRTA 204
            |.|.| ||.....:  :|||||      |..|..|...||         .:..|.:...:|.|||
Zfish   115 VHVSP-TPSTRKHI--FPWMKE------SRQNTKQKSCSIISVESCAGRQKSPPGSAASKRARTA 170

  Fly   205 YTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDS 269
            ||:.||:|||||||||:|||||||:|:|..|:|||||:|:||||||||:|:              
Zfish   171 YTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK-------------- 221

  Fly   270 LKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGI 334
                 ||                                    ......||.|..:|:|.:  .:
Zfish   222 -----DQ------------------------------------KGLGMMPSPGAQSPHSPV--SL 243

  Fly   335 SSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQVIKKEAVSTSSKASPFGY 399
            ||   |......|..:|:..|:.:||:.|      ||                       ||..|
Zfish   244 SS---GGGGGGGSAYLSSMHSLVNSVTYD------SP-----------------------SPHLY 276

  Fly   400 ENSTPSLVSFRRDSDASAVGNAPTSKAVGKKRFQSAANAIATPTPLSD-------SNSGNGSGGG 457
              :.|...::...:....:.|.|..    :||:|..    .|.||..|       :|.|....|.
Zfish   277 --NKPQSNTYSLPTSYPPLNNCPPP----QKRYQGT----GTATPEYDTHHIQGNNNYGTQVQGS 331

  Fly   458 P-----AGGYFPG------------YYPSPKQ 472
            |     .|||...            :.|.|.|
Zfish   332 PVYVSGGGGYSDSLVGMGASVFGLTHLPHPSQ 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 51/114 (45%)
Homeobox 202..254 CDD:278475 40/51 (78%)
hoxa3aNP_571609.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 79..126 16/68 (24%)
Antp-type hexapeptide 127..132 2/6 (33%)
Homeobox 168..220 CDD:278475 40/51 (78%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 223..250 9/67 (13%)
DUF4074 347..409 CDD:290032 3/17 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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