DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and meox2b

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001038589.1 Gene:meox2b / 566969 ZFINID:ZDB-GENE-060503-853 Length:289 Species:Danio rerio


Alignment Length:301 Identity:92/301 - (30%)
Similarity:120/301 - (39%) Gaps:80/301 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 PVGGCGGAGVVGGVGGVGVSV-------GQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWM 93
            |...|..||.....||....|       ..|...|..||.:||:                     
Zfish    42 PSPPCSYAGEESSFGGAHHRVHPAPQHPHHPQHHQWHVPQMPSI--------------------- 85

  Fly    94 TASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDG 158
            .:...|.....|..|      :||  ..||..||             .|:..|.|. :....|.|
Zfish    86 ESERHGLCLPHPDAA------APE--LCGTGAGS-------------QGMCAGNPT-LTGSDPSG 128

  Fly   159 MDSVP-EY------PWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKE 216
            :..|| ||      |...|:::|:..|::::..|.|....|  :..||:.|||:|..|:.|||.|
Zfish   129 VSCVPGEYGRQNMSPVEPERRSSKGKSDSSDSQDGSYKSDV--SSKPRKERTAFTKEQIRELESE 191

  Fly   217 FHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNS 281
            |..:.||.|.||.|||.:||||||||||||||||||.||.          |...:|...:.....
Zfish   192 FAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRV----------KGGQQGAAAREKELV 246

  Fly   282 NSKKSCQGCELPSDDIP--------DSTSNSRGHNNNTPSA 314
            |.||   |..|||:..|        .|.||....:::..|:
Zfish   247 NVKK---GTLLPSEFSPMVGLHHPIGSPSNEDDSHDSDQSS 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 48/105 (46%)
Homeobox 202..254 CDD:278475 36/51 (71%)
meox2bNP_001038589.1 Homeobox 177..229 CDD:278475 36/51 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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