DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and hoxb4

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001116487.1 Gene:hoxb4 / 548393 XenbaseID:XB-GENE-1033882 Length:234 Species:Xenopus tropicalis


Alignment Length:244 Identity:74/244 - (30%)
Similarity:107/244 - (43%) Gaps:64/244 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 VNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEFLNHLSPESPKIGT---------------- 123
            |:...|.|::.| .|.|..:.....:...|...:.| .|.:|.|..:.:                
 Frog    13 VDPKFPPCEEYS-HTDYLPSGHSPEYYGGQKRESSF-QHGAPYSRSLSSSSAPYTSCQGSVRQGA 75

  Fly   124 --PVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTP---------------DGMDSVPEYPWMKEK 171
              |..||.:.|...::..:          :.|.:|               .|.|.| .|||||:.
 Frog    76 RLPHSSGLLPGEKAHLESS----------ITPTSPPSCSLIASDHKHPDSPGQDPV-VYPWMKKA 129

  Fly   172 KTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLD 236
            ..||.||..:             :|..:|.|||||..|:||||||||:|:||.|.||:|||.:|.
 Frog   130 HISRASSTYS-------------DGEAKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLR 181

  Fly   237 LTERQVKVWFQNRRMKHKR-----QTLSKTDDEDNKDSLKGDDDQSDSN 280
            |:|||:|:||||||||.|:     .|..:::...|.....|..:|:..|
 Frog   182 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSNPSVNLQIAGGSPNQNKGN 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 49/110 (45%)
Homeobox 202..254 CDD:278475 37/51 (73%)
hoxb4NP_001116487.1 Homeobox 146..200 CDD:365835 37/53 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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