DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and Emx1

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001414509.1 Gene:Emx1 / 500235 RGDID:1564002 Length:290 Species:Rattus norvegicus


Alignment Length:292 Identity:81/292 - (27%)
Similarity:115/292 - (39%) Gaps:93/292 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEFLNHL 114
            ||.|   |.||.|..|..|:.                      :.|||      :|.....||:.
  Rat    53 GGTG---GSPGSGGAGSHPLA----------------------VAASE------EPLRPTALNYP 86

  Fly   115 SPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYP-------VGVVP---------QTPDGM---- 159
            .|.:.:.....|..|....|.:.::..|..:.:|       :.|.|         |.|...    
  Rat    87 HPSAAETAFVSGFPAAAAAGASRSLYGGPELVFPEAMNHPALTVHPAHQLGSSSLQPPHSFFSAQ 151

  Fly   160 --DSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGL---------PRRLRTAYTNTQLLEL 213
              |.:..|||:         ..|...|.......||::||         |:|:|||::.:|||.|
  Rat   152 HRDPLHFYPWV---------LRNRFFGHRFQASEVPQDGLLLHGPFARKPKRIRTAFSPSQLLRL 207

  Fly   214 EKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSD 278
            |:.|..|.|:....|.::|.||.|:|.||||||||||.|:|||.|    :|:..:|     :|..
  Rat   208 ERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKL----EEEGPES-----EQKK 263

  Fly   279 SNSN-------SKKSCQGCELPSDDIPDSTSN 303
            ..|:       :.|...|     :|| |.|||
  Rat   264 KGSHHINRWRIATKQANG-----EDI-DVTSN 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 29/55 (53%)
Emx1NP_001414509.1 None

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