Protein Alignment pb and Hoxa13

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001258284.1
• Gene: Hoxa13 / 500129
• RGDID: 1562483
• Length: 386
• Species: Rattus norvegicus
• Alignment Length: 258
• Identity: 64/258 - (24%)
• Similarity: 103/258 - (39%)
• Gaps: 57/258 - (22%)

  Fly    38 GGCGGAGVVGGVGGVGVS----VGQPGIGQQGVP-------PVPSVLMVNKMTPNCDKRSADTAY 91
            ||.|.||..|.......|    ..|...|...:|       ..|...|  ...||..|..|..|.
  Rat   137 GGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARM--GPHPNAIKSCAQPAS 199

  Fly    92 WMTASEGGFINSQ-PSMAEF------------------LNHLSPESPKIGTPVGSGAIGGVGVNV 137
            ...|....::::. |:..||                  .:|..|....:..||..| :||.|.:.
  Rat   200 AAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPVPGYLDMPVVPG-LGGPGESR 263

  Fly   138 NVNVGVGV-GYPVGVVPQTPDGM------DSVPEYPW---MKEKKTSRKSSNNNNQGDNSITEFV 192
            :..:|:.: .|....:|...:|.      .:.|.:.|   :.:..:....:::..:|
  Rat   264 HEPLGLPMESYQPWALPNGWNGQMYCPKEQTQPPHLWKSTLPDVVSHPSDASSYRRG-------- 320

  Fly   193 PENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKR 255
                  |:.|..||..||.|||:|:..||::.:.:|..|:|:.:|:||||.:||||||:|.|:
  Rat   321 ------RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 377

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	27/55 (49%)
Hoxa13	NP_001258284.1	HoxA13_N	<151..222	CDD:463521	15/72 (21%)
		Homeodomain	321..377	CDD:459649	27/55 (49%)