Protein Alignment pb and repo

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Alignment Length: 724
• Identity: 158/724 - (21%)
• Similarity: 222/724 - (30%)
• Gaps: 298/724 - (41%)

  Fly    22 PLNPL----------------------------QVQTGQ------TSLPVGGCGGAGVVGGVGG- 51
            |||||                            |.|..|      |.||.||.|||| .||.||
  Fly    18 PLNPLGAKPLMPTTTAMHPVMLGSVHELCSQQQQQQQQQRLPDCNTILPNGGGGGAG-SGGAGGS 81

  Fly    52 ------------VG----------VSVGQPGIGQQ--------------GVPPVPS--------- 71
                        :|          :|..|..:.||              ..|| ||
  Fly    82 PNYVTKLDFVNKMGCYSPSQKYEYISAPQKLVEQQQQQQHHHQHHQHYTATPP-PSHNGILLHKQ 145

  Fly    72 --------------VLMVNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEFLNH-----LSPE 117
                          :|..:.:....|..|:....:............|...:.|:|     |...
  Fly   146 SSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDS 210

  Fly   118 SP----------KIGTP----------------------VGSGAIGGVG-VNVNVNVGVGVGYPV 149
            ||          |:..|                      |.:|...|.| .|.:.:.|||:....
  Fly   211 SPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAA 275

  Fly   150 GVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGL-PRRLRTAYTNTQLLEL 213
            |    |..|: :.|        ...:..|::..:||        .||: .::.||.:|..||.||
  Fly   276 G----TAGGV-AAP--------AAKKDGSSSKKKGD--------PNGIKKKKTRTTFTAYQLEEL 319

  Fly   214 EKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSD 278
            |:.|....|.....|.|:|..|:|:|.:|:|||||||.|.::.
  Fly   320 ERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKH---------------------- 362

  Fly   279 SNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTP--NSSLETGISSNLMGS 341
                             :.|..|...:   .:||.....||  |.|.|  .|..:|
  Fly   363 -----------------EPPRKTGYIK---TSTPPTATLNP--GTLAPPFTSYPQT--------- 396

  Fly   342 TTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQVIKKEAVSTSSKASPFG-YENSTPS 405
            |||:....:.:.:|..:...|.......||                     .|||:| |.....:
  Fly   397 TTVTPPGSMDSWTSYQTPYELTPQFSLLSP---------------------AASPYGTYSGQYGA 440

  Fly   406 LVSFRRDSDASAVGN----APTSKAVGKKRFQSAANAIATPTPLSDSNSGNGSGGGPAGGYFPGY 466
            .|   .:|....:.:    :||...:|           ||    :.|.:|||......||.:
  Fly   441 YV---HESQLFPMRHYEYGSPTRMEMG-----------AT----TGSVAGNGDESVANGGSY--- 484

  Fly   467 YPSPKQQQQVQQQQL--------HPQQQQLPQQQPQDYYGKY-DIEFAASPHHNPHNKQQALHGE 522
              ...:.|..|||||        |..|||  |||.|...||| ..|.|...|...|   |:..|.
  Fly   485 --QTAELQTAQQQQLADGTLVTVHAHQQQ--QQQQQQLNGKYLSAEEAKYVHLQCH---QSGGGL 542

  Fly   523 YLSPKPSSANFHQNSQQQQQNDHFY--------------YNYNDTNGTPYLNHQQQHHHHAQHHQ 573
            .|||   .|:.|   ..:.|..|:.              .:.||:.|...:...::    ....|
  Fly   543 ELSP---GASCH---LVEAQGQHYVTTATGGAASAGGTSSDDNDSGGMQTVIKSEE----VSQQQ 597

  Fly   574 QQQHHQNHV 582
            |||..|::|
  Fly   598 QQQQGQSYV 606

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	25/55 (45%)
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	22/47 (47%)