Protein Alignment pb and ro

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Alignment Length: 279
• Identity: 70/279 - (25%)
• Similarity: 103/279 - (36%)
• Gaps: 99/279 - (35%)

  Fly    52 VGVSVGQPGIGQQ------------GVPPVPSV--LMVNKMTPNCDKRSA--------------- 87
            :|...|.|||.:.            .||..||.  ....::..:.:.||:
  Fly     8 IGSPDGSPGIKRSDSLDPIANTTILSVPQRPSSPRQFFERLYGHLETRSSENGEIDVGTHAHKPP 72

  Fly    88 --DTAYWMTASEGGFINS--------QPSMA-----EFLNHLS--PESP---------------- 119
              ||.|   .|:||.::|        :.|:|     :|..|..  |:.|
  Fly    73 PCDTPY---HSDGGSVSSPDISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHPPQ 134

  Fly   120 ----KIG--TPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSS 178
                |:.  :|..:.|.||.     .|..:...:|.| .|..|........:...:.:|..|:
  Fly   135 LVHQKLSYVSPPPAIAAGGA-----ANPVLPHAFPAG-FPSDPHFSAGFSAFLARRRRKEGRQ-- 191

  Fly   179 NNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVK 243
                                ||.||.::..|.|.||.|||.|:|:.|.||.|:|.:|.|||.|:|
  Fly   192 --------------------RRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIK 236

  Fly   244 VWFQNRRMKHKRQTLSKTD 262
            :||||||.|.||...::.|
  Fly   237 IWFQNRRAKDKRIEKAQID 255

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	31/55 (56%)
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	28/51 (55%)