DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and abd-A

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster


Alignment Length:432 Identity:105/432 - (24%)
Similarity:157/432 - (36%) Gaps:110/432 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LDTTSMGTQIKSESPLNPLQVQTGQTSL----------PVGGCGGAGVVGGVGGVGVSVGQPGIG 62
            |...|.|.....:|..:|....:|.:||          .......|.....|.....:.......
  Fly   188 LTPPSAGNSQAGDSSCSPSPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASS 252

  Fly    63 QQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTASEGGF---------------------INSQPS 106
            ...:|       .:||.|.....        .:|.||.                     :||..|
  Fly   253 SFAIP-------TSKMYPYVSNH--------PSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQS 302

  Fly   107 M----------AEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPV-GVVPQTPD--- 157
            |          |:|..|.:..:    :.|.:.:.|.:||:   ::|.....|. ||:|....   
  Fly   303 MSVPASASAQFAQFYQHATAAA----SAVSAASAGAIGVD---SLGNACTQPASGVMPGAGGAGG 360

  Fly   158 -GMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRL-RTAYTNTQLLELEKEFHFN 220
             |:..:|.||||...............||     |...||.|||. |..||..|.||||||||||
  Fly   361 AGIADLPRYPWMTLTDWMGSPFERVVCGD-----FNGPNGCPRRRGRQTYTRFQTLELEKEFHFN 420

  Fly   221 KYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTD-------DEDNKDSLKGDDDQSD 278
            .||.|.||||||.:|.|||||:|:||||||||.|::..:..:       |.:.::.:|..:....
  Fly   421 HYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKS 485

  Fly   279 SNSN----------------SKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNN---------N 318
            :..|                .::..|..:....|.....:::.||.:::....|:         .
  Fly   486 AQQNKQVQQQQQQQQQQQQQQQQQHQQQQQQPQDHHSIIAHNPGHLHHSVVGQNDLKLGLGMGVG 550

  Fly   319 PSAGNLTPNSSLETGISSNL--MGSTTVSASNVISADSSVAS 358
            ...|.:.|  .:..|:..||  |.:...|..:::.|.|.|.|
  Fly   551 VGVGGIGP--GIGGGLGGNLGMMSALDKSNHDLLKAVSKVNS 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 50/113 (44%)
Homeobox 202..254 CDD:278475 38/51 (75%)
abd-ANP_732176.1 Homeobox 402..454 CDD:278475 38/51 (75%)
Abdominal-A 456..478 CDD:289192 1/21 (5%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439750
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 1 0.900 - - E2759_KOG0489
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.740

Return to query results.
Submit another query.