Protein Alignment pb and abd-A

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 432
• Identity: 105/432 - (24%)
• Similarity: 157/432 - (36%)
• Gaps: 110/432 - (25%)

  Fly     8 LDTTSMGTQIKSESPLNPLQVQTGQTSL----------PVGGCGGAGVVGGVGGVGVSVGQPGIG 62
            |...|.|.....:|..:|....:|.:||          .......|.....|.....:.......
  Fly   188 LTPPSAGNSQAGDSSCSPSPSASGSSSLHRSLNDNSPGSASASASASAASSVAAAAAAAAAAASS 252

  Fly    63 QQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTASEGGF---------------------INSQPS 106
            ...:|       .:||.|.....        .:|.||.                     :||..|
  Fly   253 SFAIP-------TSKMYPYVSNH--------PSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQS 302

  Fly   107 M----------AEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPV-GVVPQTPD--- 157
            |          |:|..|.:..:    :.|.:.:.|.:||:   ::|.....|. ||:|....
  Fly   303 MSVPASASAQFAQFYQHATAAA----SAVSAASAGAIGVD---SLGNACTQPASGVMPGAGGAGG 360

  Fly   158 -GMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRL-RTAYTNTQLLELEKEFHFN 220
             |:..:|.||||...............||     |...||.|||. |..||..|.||||||||||
  Fly   361 AGIADLPRYPWMTLTDWMGSPFERVVCGD-----FNGPNGCPRRRGRQTYTRFQTLELEKEFHFN 420

  Fly   221 KYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTD-------DEDNKDSLKGDDDQSD 278
            .||.|.||||||.:|.|||||:|:||||||||.|::..:..:       |.:.::.:|..:....
  Fly   421 HYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQETMKS 485

  Fly   279 SNSN----------------SKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNN---------N 318
            :..|                .::..|..:....|.....:::.||.:::....|:         .
  Fly   486 AQQNKQVQQQQQQQQQQQQQQQQQHQQQQQQPQDHHSIIAHNPGHLHHSVVGQNDLKLGLGMGVG 550

  Fly   319 PSAGNLTPNSSLETGISSNL--MGSTTVSASNVISADSSVAS 358
            ...|.:.|  .:..|:..||  |.:...|..:::.|.|.|.|
  Fly   551 VGVGGIGP--GIGGGLGGNLGMMSALDKSNHDLLKAVSKVNS 590

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	40/56 (71%)
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	39/55 (71%)
		Abdominal-A	456..478	CDD:403567	1/21 (5%)