Protein Alignment pb and Ubx

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Alignment Length: 279
• Identity: 90/279 - (32%)
• Similarity: 121/279 - (43%)
• Gaps: 77/279 - (27%)

  Fly    38 GGCGGAGVVGGVGGVGVSVGQPGI---GQQ----GVPPVPSVLMVNKMTPNCDKRSADTAYWMTA 95
            ||.||.|..||.||.|.:.|....   ||.    |:|..||.     .||  |.|
  Fly   116 GGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSA-----CTP--DSR---------- 163

  Fly    96 SEGGFINSQPSMAEFLNHLSPESPK-------IGTPVGSGAIGGVGVNVNVNVGVGVGYPV---- 149
             .||::::...        ||.|.:       :....|:|..|||...|.| .|.|..:..
  Fly   164 -VGGYLDTSGG--------SPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGV-AGAGTAWNANCTI 218

  Fly   150 -GVVPQTPDGMDSVPE------YPWM------KEKKTSRKSSNNNNQ----------------GD 185
             |...||. ...|:.:      ||||      .|..|..|..::..|                ..
  Fly   219 SGAAAQTA-AASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAG 282

  Fly   186 NSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRR 250
            :.:.:::..|||.||.|..||..|.||||||||.|.||.|.||||:|.:|.|||||:|:||||||
  Fly   283 SLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRR 347

  Fly   251 MKHKR--QTLSKTDDEDNK 267
            ||.|:  |.:.:.::::.:
  Fly   348 MKLKKEIQAIKELNEQEKQ 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	38/55 (69%)
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	38/55 (69%)