Protein Alignment pb and Scr

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 399
• Identity: 110/399 - (27%)
• Similarity: 140/399 - (35%)
• Gaps: 160/399 - (40%)

  Fly     1 MQEVCSSLDTTSMGTQIKSESP--LNPLQVQTGQTSLPVGGCGGAGVVGGVGGV----GVSVGQ- 58
            |...|.::.:......:.|..|  :||.|...|..:...||.||.  .||.|||    |.:.||
  Fly     1 MDPDCFAMSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGG--AGGSGGVVPSGGTNGGQG 63

  Fly    59 ------PG-----------------------------IGQQGVPPV-------PSVLMVNKMTPN 81
                  ||                             .|.||.|.:       |..|::.:....
  Fly    64 SAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQ 128

  Fly    82 CDKRSADTAYWMTA------------------------------------SEGGFI--------- 101
            ..::.|..|..:.|                                    |.||.:
  Fly   129 QQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNS 193

  Fly   102 ------NSQP-------SMAEFLNHLSPES--PKIGTPVGSGAIGG--------VGVNVNVNVGV 143
                  |||.       |..:....|||.|  ..:...:..|.:||        .|:| |.:.|.
  Fly   194 ANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLN-NNHSGS 257

  Fly   144 GV-GYP--VGVVPQTPDGMDSVPE-----------------------YPWMKEKKTSRKSSNNNN 182
            || |.|  |.|...:|.|.||..|                       |||||.....
  Fly   258 GVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLG-------- 314

  Fly   183 QGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQ 247
                  |..|..||..:|.||:||..|.||||||||||:||.|.||||||.:|.|||||:|:|||
  Fly   315 ------TSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 373

  Fly   248 NRRMKHKRQ 256
            |||||.|::
  Fly   374 NRRMKWKKE 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	40/55 (73%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	40/55 (73%)