DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and bcd

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster


Alignment Length:591 Identity:122/591 - (20%)
Similarity:163/591 - (27%) Gaps:294/591 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTD 262
            |||.||.:|::|:.|||:.|...:||..||..:::|.|.|...|||:||:|||.:||.|:     
  Fly    97 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS----- 156

  Fly   263 DEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTPN 327
                       |...|.:........|.:....|.|...:.|.|               |..|||
  Fly   157 -----------DQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLG---------------GGATPN 195

  Fly   328 SSLETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQVIKKEAVSTSS 392
            :                                                                
  Fly   196 A---------------------------------------------------------------- 196

  Fly   393 KASPFGYENSTPSLVSFRRDSDASAVGNAPTSKAVGKKRFQSAANAIATPTP-LSDSNSGNGSGG 456
                     .|||                ||.               :|||. :::..|.:    
  Fly   197 ---------LTPS----------------PTP---------------STPTAHMTEHYSES---- 217

  Fly   457 GPAGGYFPGYYPSPKQQQQVQQQQLHPQQQQLPQQQPQDYYGKYDIEFAASPHHNPHNKQQA--- 518
                  |..||                           :|.|             .||..||   
  Fly   218 ------FNAYY---------------------------NYNG-------------GHNHAQANRH 236

  Fly   519 LHGEYLS---PKPSSANFHQNSQQQQQNDHFYYNYNDTNGTPYLNHQQQHHHHAQH--HQQQQHH 578
            :|.:|.|   |.|.|.|.:.....|||..|              |||||.||...|  ||.||. 
  Fly   237 MHMQYPSGGGPGPGSTNVNGGQFFQQQQVH--------------NHQQQLHHQGNHVPHQMQQQ- 286

  Fly   579 QNHVADFEGPVNGPSNFNNGAYYDNMSFQQQAQAHQHQTVVFQQQQ-----------PHQPAAIN 632
                                        |||||..|:....|||:|           |......|
  Fly   287 ----------------------------QQQAQQQQYHHFDFQQKQASACRVLVKDEPEADYNFN 323

  Fly   633 HQHMHHLG-NGETYSALGLQMENCEGYNNFGAAGTGGGYYEAGQQPPIPATHGHGHHPHHVQVPA 696
            ..:....| :|.|.||..:..         |||..|...||       |.|      |.:.:.|:
  Fly   324 SSYYMRSGMSGATASASAVAR---------GAASPGSEVYE-------PLT------PKNDESPS 366

  Fly   697 QAHAPIHAHHNSAAIPGGVGVGPPPSHIHGFAINGGPAVQGQAFGNNGSTAAG-TAAISGLENS- 759
            ..               |:|:|.|.:    .|:....|......|.:..|... ...:.||:.| 
  Fly   367 LC---------------GIGIGGPCA----IAVGETEAADDMDDGTSKKTTLQILEPLKGLDKSC 412

  Fly   760 --NSSD 763
              .|||
  Fly   413 DDGSSD 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 29/75 (39%)
Homeobox 202..254 CDD:278475 23/51 (45%)
bcdNP_788587.1 Homeobox 106..153 CDD:278475 20/46 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439775
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 1 0.900 - - E2759_KOG0489
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D858478at2759
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45664
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.940

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