Protein Alignment pb and msx1

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001032329.1
• Gene: msx1 / 394692
• XenbaseID: XB-GENE-490378
• Length: 275
• Species: Xenopus tropicalis
• Alignment Length: 285
• Identity: 74/285 - (25%)
• Similarity: 110/285 - (38%)
• Gaps: 95/285 - (33%)

  Fly    10 TTSMGTQIKSESPLNPLQVQTGQTSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLM 74
            |...|.:::....:|.:|.                      |:.|::|      :..|.||.:|.
 Frog     9 TYQPGVKVEESPSVNKMQT----------------------GLKVALG------EDKPKVPGILP 45

  Fly    75 VNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEFLNHLSPE-SPKIGTP----VGSGAIGGVG 134
            .:......|::                   |.....|:  ||. ||..||.    |||.|   .|
 Frog    46 FSVEALMADRK-------------------PGRERDLS--SPTGSPLAGTSHSPRVGSLA---PG 86

  Fly   135 VNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYP----WMKEKK--------------TSRKSSNNN 181
            ...|..:.:|..:|||.:.:.|:.....||.|    |::..:              |.||...|
 Frog    87 ETPNSPISIGNRFPVGGIMKLPEEALVKPESPERSSWIQSPRFSPSPTRRMSPPACTLRKHKTN- 150

  Fly   182 NQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWF 246
                             |:.||.:|.:|||.||::|...:||....|.|.::||:|||.|||:||
 Frog   151 -----------------RKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWF 198

  Fly   247 QNRRMKHKRQTLSKTDDEDNKDSLK 271
            ||||.|.||  |.:.:.|..|.:.|
 Frog   199 QNRRAKAKR--LQEAELEKLKMAAK 221

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	29/55 (53%)
msx1	NP_001032329.1	PTZ00449	<55..>259	CDD:185628	62/211 (29%)
		Homeodomain	151..207	CDD:459649	29/55 (53%)