DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and ventx1.2

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_988861.1 Gene:ventx1.2 / 394455 XenbaseID:XB-GENE-920868 Length:262 Species:Xenopus tropicalis


Alignment Length:152 Identity:46/152 - (30%)
Similarity:69/152 - (45%) Gaps:39/152 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 VPQTPDGMD--SVPEYPWMKEKKTSRKSSN-------------------------------NNNQ 183
            :|:..||.:  .:..:....|:..:|:.||                               |:.:
 Frog    48 IPRRKDGQEQGEITSFQCSSEEARNRQFSNPSLPALHRSSGSSDEFSPAGSEDDGTESSGRNSQE 112

  Fly   184 GDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQN 248
            .|.......|::.|.||||||:|..|:..||:.|:..:||....|.::|.||.|:|.|||.||||
 Frog   113 NDTEHRSKSPKSDLQRRLRTAFTPQQITRLEQAFNKQRYLGASERKKLATSLQLSEIQVKTWFQN 177

  Fly   249 RRMKHKRQTLSKTDDEDNKDSL 270
            ||||.|||.      :|.:.|:
 Frog   178 RRMKLKRQI------QDQQPSM 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 30/55 (55%)
ventx1.2NP_988861.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 16..129 11/80 (14%)
Homeodomain 128..184 CDD:459649 30/55 (55%)

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