DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pb and Lmx1a

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:227 Identity:62/227 - (27%)
Similarity:91/227 - (40%) Gaps:48/227 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 PENGL--PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKR 255
            |.:|.  |:|.||..|:.|..:.:..|..:...||..|..:|....|:.|.|:|||||:|.|.|:
  Fly   417 PRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKK 481

  Fly   256 -QTLSKTDDEDNKDSLKG-------DDDQSDSNSNSKKSCQGCELPSDDIP-----DSTSNSRGH 307
             |..:|.:......|..|       ..|..|:|....| |...||..|...     |||..|:..
  Fly   482 IQRKAKQNGGSGGGSGSGRGTGNSSATDDKDTNDKEDK-CVKQELGGDSSGYLGGLDSTFASQPL 545

  Fly   308 NNNTPSATNNNPSAGNLTPNSSLETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPI 372
            |.|.|.:.::.|:..|       ::..||:|    ::..||....|.. |.|:||:         
  Fly   546 NPNLPFSPDDYPANSN-------DSFCSSDL----SLDGSNFDQLDDD-ADSLSLN--------- 589

  Fly   373 KVKKKDDGQVIKKEAVSTSSKASPFGYENSTP 404
                       ..|..||||..:...:.:|.|
  Fly   590 -----------NLELQSTSSSGNQHSHSHSNP 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 20/55 (36%)
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649 20/55 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.