Protein Alignment pb and Hmx1

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001101833.2
• Gene: Hmx1 / 360960
• RGDID: 1304928
• Length: 333
• Species: Rattus norvegicus
• Alignment Length: 230
• Identity: 60/230 - (26%)
• Similarity: 84/230 - (36%)
• Gaps: 82/230 - (35%)

  Fly    39 GCGGA-----GVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKRSADTAYWMTASEG 98
            |||||     ...||.||             |:.|..|           |:.|.:|...|..:|.
  Rat   103 GCGGATRWYPRAQGGYGG-------------GLSPDTS-----------DRDSPETGEDMGRAES 143

  Fly    99 GFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTP-DGMDSV 162
            .:               |..|      |.||:                 |..|..|.| .|.:..
  Rat   144 AW---------------PRCP------GPGAV-----------------PREVTTQGPAAGGEEA 170

  Fly   163 PEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPR 227
            .|   :.|......::....:|           |..::.||.::.:|:.:||..|...:||....
  Rat   171 AE---LAEAPAVAAAAAGEARG-----------GRRKKTRTVFSRSQVFQLESTFDLKRYLSSAE 221

  Fly   228 RIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTD 262
            |..:||||.|||.|||:||||||.|.|||..::.:
  Rat   222 RAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELE 256

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	26/55 (47%)
Hmx1	NP_001101833.2	Homeodomain	193..249	CDD:459649	26/55 (47%)