Protein Alignment pb and scro

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Alignment Length: 343
• Identity: 83/343 - (24%)
• Similarity: 133/343 - (38%)
• Gaps: 80/343 - (23%)

  Fly    21 SPLNPLQVQTGQTSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMTPNCDKR 85
            :|.:|.:..:..:|:...|......:.....:|.....||: |....|..::.:....|   |.|
  Fly   137 NPPSPFRSNSSSSSINSPGTLTTSTMANPYAMGTLYHSPGV-QTYCGPTDNLSLAGHYT---DMR 197

  Fly    86 SADTAYWMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVG 150
            ::.:.|..||::..|..|                ::.:...||.:..:| |::......|.
  Fly   198 NSASWYGSTANDPRFAIS----------------RLMSSSASGTMSHMG-NMSGLAACSVS---- 241

  Fly   151 VVPQTPDGMDSVP-EYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELE 214
                     ||.| ::|..:.:|.                            |..:|..|:.|||
  Fly   242 ---------DSKPLQFPLAQRRKR----------------------------RVLFTQAQVYELE 269

  Fly   215 KEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDS 279
            :.|...:||..|.|..:|:.:.||..|||:||||.|.|.|||...|...|.|         |.:.
  Fly   270 RRFKQQRYLSAPEREHLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAMAEQN---------QHNQ 325

  Fly   280 NSNSKKSCQGCELPSDDIP----DSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLETGISSNLMG 340
            .::|.:......|..|..|    :|:|.|:.|..|:.||.||..||.|...||.: ..:::|:.|
  Fly   326 PASSPRRVAVPVLVKDGKPCSGNNSSSQSQQHGTNSTSAGNNTGSANNGNANSGI-VSVTANVSG 389

  Fly   341 S---TTVSASNVISADSS 355
            .   .|..|.|..|.|:|
  Fly   390 GLNLITGDAPNSHSPDTS 407

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	23/55 (42%)
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	24/83 (29%)