DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and al

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster


Alignment Length:460 Identity:103/460 - (22%)
Similarity:142/460 - (30%) Gaps:170/460 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 PESPKIG----------TPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYPWMKE 170
            |:..|:.          .|..|.|..|..:.|:::|..|          .|.|....       .
  Fly    13 PQEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSGG----------APSGASGA-------S 60

  Fly   171 KKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASL 235
            ..|:...|:.|:  |....|:.|:. ..||.||.:|:.||.||||.|....|.....|.|:|..:
  Fly    61 GGTNSPVSDGNS--DCEADEYAPKR-KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKI 122

  Fly   236 DLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDS 300
            .|||.:::|||||||.|.::|                          .|...|            
  Fly   123 GLTEARIQVWFQNRRAKWRKQ--------------------------EKVGPQ------------ 149

  Fly   301 TSNSRGHNNNTP--SATNNNPSAGNLTPNSSLETGISSNLMGSTTVSASNVISADSSVASSVSLD 363
               |..:|...|  :||........|.||.....|                              
  Fly   150 ---SHPYNPYLPGGAATMQTVVGAALPPNPFTHLG------------------------------ 181

  Fly   364 EDIEESSPIKVKKKDDGQVIKKEAV-----STSSKASPFGYEN----STPSLVSFRRDSDASAVG 419
                    .:::|..|.|.....|.     .:::...|.||.|    :.|.::     ....|..
  Fly   182 --------FQLRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHML-----PHGMAGM 233

  Fly   420 NAPTSKAVGKKRFQS-AANAIATP--TPLS----------DSNSGN----GSGGGPAGGYFPGYY 467
            .:|:|.      ||| .||..|.|  |||.          |.:|.|    .....||.|:     
  Fly   234 YSPSSS------FQSLLANMTAVPRGTPLGKPPALLVGSPDLHSPNHMLASPPTSPASGH----- 287

  Fly   468 PSPKQQQQVQQQQLHPQQQQLPQQQPQDYYGKYDIEFAASPHHNPHNKQQALHGEYLSPKPSSAN 532
                ..|..|....||...|.|.|.|   .|....:.  ||.|        |.|..|:.:.||.:
  Fly   288 ----ASQHQQHPTAHPPPPQAPPQMP---VGVQPAQL--SPQH--------LVGIALTQQASSLS 335

  Fly   533 FHQNS 537
            ..|.|
  Fly   336 PTQTS 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 27/55 (49%)
alNP_722629.1 Homeodomain 86..142 CDD:459649 27/55 (49%)
OAR 374..391 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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