DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and B-H2

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_523386.1 Gene:B-H2 / 32723 FlyBaseID:FBgn0004854 Length:645 Species:Drosophila melanogaster


Alignment Length:416 Identity:96/416 - (23%)
Similarity:140/416 - (33%) Gaps:150/416 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   390 TSSKASPFGYENSTPSLVSFRRDSDASAVGNA---PTSKAVG------------KKRFQ------ 433
            :::.|:|.|   |.||..:..    .:|||..   |.|.|||            :.||.      
  Fly     9 SATTAAPVG---SAPSATAHH----PAAVGGGMPRPASPAVGSNTTTATATTATRSRFMITDILA 66

  Fly   434 ----SAANAIATPTPLSDSNSGNGSGGGPAGGYFPGYYPSPKQQQQ----------VQQQQLHPQ 484
                ::|.|.|....|:.::||.|.|.           |:..:::|          .||||.|..
  Fly    67 GAAAASAAAAAAAAALAAASSGGGRGS-----------PTDSEREQSLVAQHHHHHQQQQQHHHH 120

  Fly   485 QQQLPQQQPQDYYGKYDIEFAASPHHNPHNKQQALHGEYLSPKPSSANFHQNSQQQQQNDHFYYN 549
            |||..|||                      .|||...:|:..:.....|.:..:::::.:|:...
  Fly   121 QQQQQQQQ----------------------HQQAALQQYIVQQQQLLRFEREREREREREHYRER 163

  Fly   550 YNDTNGTPYLNHQQQHHHHAQHHQQQQHHQNHVADFEGPVNGPSNFNNGAYYDNMSFQQQAQAHQ 614
            ::.....||           .||....|...|...              |:|..:..|||.|   
  Fly   164 HSPPGNNPY-----------AHHPMPPHLLAHFPP--------------AHYAVLQQQQQQQ--- 200

  Fly   615 HQTVVFQQQQPHQPAAINHQHMHHLGNGETYSALGLQMENCEGYNNFGAAGTGGGYYEAGQQPPI 679
                  ||||        |.|.||         |.|:.|..|..:..|...||.           
  Fly   201 ------QQQQ--------HPHPHH---------LQLERERLEALHRHGHGLTGD----------- 231

  Fly   680 PATH-GHGHHPHHVQVPAQAHAPIHAHHNSAAIP----GGVGVGPPPSHIHGFAINGGPAVQGQA 739
            ||.| .|..|..|.|.....|.|:|...:.:.:.    ||.|.....::      |...:.....
  Fly   232 PAQHLSHLSHLSHQQHHPHLHHPMHDERSRSPLMLQQLGGNGGNNNNNN------NNSSSASNNN 290

  Fly   740 FGNNGSTAAGTAAISGLENSNSSDFN 765
            ..||.|.:|.:..|||  ||:||:.|
  Fly   291 NNNNNSASANSNIISG--NSSSSNNN 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649
B-H2NP_523386.1 Homeodomain 381..437 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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