DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and HOXD3

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_008829.3 Gene:HOXD3 / 3232 HGNCID:5137 Length:432 Species:Homo sapiens


Alignment Length:398 Identity:113/398 - (28%)
Similarity:155/398 - (38%) Gaps:106/398 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SSLDTTSMGT--QIKSESPLNPLQVQTGQTSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPP 68
            |||||...|:  .|:|.:||.....:..:.:   |.|...|.....||.|.| ..||:..:..||
Human    57 SSLDTDYPGSACSIQSSAPLRAPAHKGAELN---GSCMRPGTGNSQGGGGGS-QPPGLNSEQQPP 117

  Fly    69 VPSVLMVNKMTPNCDKRSADTAYWMTASEGGFINSQPSMAEFLNHLSPESPKIGTPVGSGAIGGV 133
            .|                                  |.....|...||.:|           || 
Human   118 QP----------------------------------PPPPPTLPPSSPTNP-----------GG- 136

  Fly   134 GVNVNVNVGVGVGYPVGVVPQTPDGMDSVPE--YPWMKEKKTSRKSSNNNNQGDNSITEFVPENG 196
                    ||....|.| .|.......::.:  :|||||.:.:.|..|:......|..:..|...
Human   137 --------GVPAKKPKG-GPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGP 192

  Fly   197 LPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKT 261
            ..:|:|||||:.||:|||||||||:|||||||:|:|..|:|||||:|:||||||||:|:      
Human   193 ASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK------ 251

  Fly   262 DDEDNKDSLKGDDDQSDSNSNSKKSCQG-----CELP-----SDDIPDSTSNSRGHNNNTPSATN 316
             |:..|..|.....||...|.......|     .:||     :.|.|...:.::...|....|..
Human   252 -DQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAY 315

  Fly   317 NNP-----------SAGNLTPNSSLETG---ISSNLMGSTTVSASNVISADS------------S 355
            ..|           :|....|:.....|   .|:||.||......|.:.:.:            |
Human   316 TAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVESMAPASGPVFNLGHLS 380

  Fly   356 VASSVSLD 363
            ..||.|:|
Human   381 HPSSASVD 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 41/55 (75%)
HOXD3NP_008829.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 43..62 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..197 37/187 (20%)
Antp-type hexapeptide 160..165 2/4 (50%)
Homeodomain 195..251 CDD:459649 41/55 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..280 6/26 (23%)
DUF4074 369..430 CDD:463833 5/20 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..432
Blue background indicates that the domain is not in the aligned region.

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