DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and HOXA6

DIOPT Version :9

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_076919.1 Gene:HOXA6 / 3203 HGNCID:5107 Length:233 Species:Homo sapiens


Alignment Length:254 Identity:81/254 - (31%)
Similarity:104/254 - (40%) Gaps:68/254 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LNPLQVQTGQTSLPVGGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVPSVLMVNKMT----PNCD 83
            |.|.....|.:|||                ..:...|...||.    .|||..|:.:    .:|.
Human    35 LRPFPASYGASSLP----------------DKTYTSPCFYQQS----NSVLACNRASYEYGASCF 79

  Fly    84 KRSADTAYWMTASEGGFINSQPSMAEFLNHLSPESP-KIGTPVGSG-AIGGVGVNVNVNVGVGVG 146
            ....|.:   .||..| ...|....::| |.|||.. |..:..|.| |:...|.           
Human    80 YSDKDLS---GASPSG-SGKQRGPGDYL-HFSPEQQYKPDSSSGQGKALHDEGA----------- 128

  Fly   147 YPVGVVPQTPDGMDSVPEYPWMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLL 211
                      |...:.|.|||| ::..|...:...:.|              ||.|..||..|.|
Human   129 ----------DRKYTSPVYPWM-QRMNSCAGAVYGSHG--------------RRGRQTYTRYQTL 168

  Fly   212 ELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQT-LSKTDDEDNKDS 269
            |||||||||:||.|.||||||.:|.|||||:|:||||||||.|::. |..:.....:||
Human   169 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDS 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 COG5576 168..274 CDD:227863 47/103 (46%)
Homeobox 202..254 CDD:278475 38/51 (75%)
HOXA6NP_076919.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..127 12/39 (31%)
Antp-type hexapeptide 136..141 4/5 (80%)
Homeobox 159..212 CDD:365835 38/52 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..233 3/14 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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