DRSC/TRiP Functional Genomics Resources

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Protein Alignment pb and CG11294

DIOPT Version :10

Sequence 1:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_572500.1 Gene:CG11294 / 31807 FlyBaseID:FBgn0030058 Length:261 Species:Drosophila melanogaster


Alignment Length:420 Identity:86/420 - (20%)
Similarity:117/420 - (27%) Gaps:190/420 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 ITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMK 252
            :||::......||.||.:|..||.|||..|....|.....|.|:|..:.|:|.:|:|||||||.|
  Fly    14 LTEYMFGRRRQRRNRTTFTPQQLQELEALFQKTHYPDVFLREEVALRISLSEARVQVWFQNRRAK 78

  Fly   253 HKRQT-LSKTDDEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATN 316
            .::|. |....|......|.                                             
  Fly    79 WRKQARLQLLQDAWRMRCLS--------------------------------------------- 98

  Fly   317 NNPSAGNLTPNSSLETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQ 381
                                  :|:..|.....:...|                           
  Fly    99 ----------------------LGTPPVMGGGAVQGGS--------------------------- 114

  Fly   382 VIKKEAVSTSSKASPFGYENSTP-SLVSFRRDSDASAVGNAPTSKAVGKKRFQSAANAIATPTPL 445
                   ...:.|.|   .:.|| :|.|..:||:.:.|||                         
  Fly   115 -------GNGATARP---PSQTPENLSSASKDSELAEVGN------------------------- 144

  Fly   446 SDSNSGNGSGGGPAGGYFPGYYPSPKQQQQVQQQQLHPQQQQLPQQQPQDYYGKYDIEFAASPHH 510
                       ||..|.|...:|:.:||.|.||.|.|  ||...|.:....|.:..: :.|..|.
  Fly   145 -----------GPNSGSFTMMHPAFQQQHQQQQHQGH--QQATDQDKLSKTYTELKL-YKAPSHG 195

  Fly   511 NPHNKQQALHGEYLSPKPSSA--------------NFHQNSQQQQQNDHFYYNYNDTNGTPYLNH 561
            .......||.|.  |.:.|..              :|.|:|:.|||                   
  Fly   196 MELGGMAALSGH--SDEGSDGSDSEEIDLTSGACIDFSQSSKLQQQ------------------- 239

  Fly   562 QQQHHHHAQHHQQQQHHQNHVADFEGPVNG 591
            |||        ||||..|......|  .||
  Fly   240 QQQ--------QQQQGTQGAAGSAE--ANG 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pbNP_476669.3 Homeodomain 199..255 CDD:459649 26/55 (47%)
CG11294NP_572500.1 Homeodomain 29..81 CDD:459649 23/51 (45%)

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