Protein Alignment pb and Gsc

DIOPT Version :10

• Sequence 1: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_001178802.1
• Gene: Gsc / 317715
• RGDID: 631425
• Length: 256
• Species: Rattus norvegicus
• Alignment Length: 247
• Identity: 68/247 - (27%)
• Similarity: 92/247 - (37%)
• Gaps: 93/247 - (37%)

  Fly   116 PESPKIGTPV-----------GSG---------------AIGGVGVNVNVNVGVGVGY------- 147
            |.:|....||           |:|               |.||.|:...|. |..:||
  Rat    24 PVAPSAAAPVVFPALHGDSLYGAGGGTSSDYGAFYPRPVAPGGAGLPAAVG-GSRLGYNSYFYGQ 87

  Fly   148 ------PV-----GVVP----------QTPDGMDS--------VPE--YPWMKEKKTSRKSSNNN 181
                  ||     |.||          .||.|.:.        ||.  .|:|
  Rat    88 LHVQAAPVGPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLVSPVPHQMLPYM------------- 139

  Fly   182 NQGDNSITEFVPENGL----PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQV 242
            |.|..|.||....|.|    .||.||.:|:.||..||..|...||.....|.::|..:.|.|.:|
  Rat   140 NVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKV 204

  Fly   243 KVWFQNRRMKHKRQTLSKTDDED-----NKDSLKG------DDDQSDSNSNS 283
            :|||:|||.|.:||..|.:::.:     ||.|.|.      ::.:||.:|:|
  Rat   205 EVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSKASPEKREEEGKSDLDSDS 256

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	24/55 (44%)
Gsc	NP_001178802.1	Homeodomain	161..217	CDD:459649	24/55 (44%)